staden-2.0.0b11-2016

A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.

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FROM ubuntu:18.04

RUN apt-get update \
    && apt-get install -y \
        wget \
        libcurl3 \
        bzip2 \
        liblzma-dev

WORKDIR /opt

RUN wget https://sourceforge.net/projects/staden/files/staden/2.0.0b11/staden-2.0.0b11-2016-linux-x86_64.tar.gz/download -O staden-2.0.0b11-2016-linux-x86_64.tar.gz \
    && tar xzf staden-2.0.0b11-2016-linux-x86_64.tar.gz \
    && rm staden-2.0.0b11-2016-linux-x86_64.tar.gz

ENV LD_LIBRARY_PATH /opt/staden-2.0.0b11-2016-linux-x86_64/lib

RUN ln -s /opt/staden-2.0.0b11-2016-linux-x86_64/bin/* /usr/local/bin/

biodockerfiles

staden-2.0.0b11-2016