samtools-1.20

Samtools is a suite of programs for interacting with high-throughput sequencing data.

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FROM ubuntu:24.04

RUN apt-get update \
    && apt-get upgrade --yes \
    && apt-get install --yes --no-install-recommends \
        autoconf \
        automake \
        make \
        gcc \
        perl \
        zlib1g-dev \
        libbz2-dev \
        liblzma-dev \
        libcurl4-gnutls-dev \
        libssl-dev \
        libncurses5-dev \
        libdeflate-dev \
        wget \
        bzip2 \
    && apt-get clean \
    && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

WORKDIR /opt

RUN wget --no-check-certificate https://github.com/samtools/samtools/releases/download/1.20/samtools-1.20.tar.bz2 \
        && tar xjf samtools-1.20.tar.bz2 \
        && rm samtools-1.20.tar.bz2

WORKDIR /opt/samtools-1.20

RUN ./configure \
    && make \
    && make install

biodockerfiles

samtools-1.20