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Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads.
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FROM ubuntu:18.04
RUN apt-get update -y --fix-missing
RUN apt-get upgrade -y
RUN apt-get install wget bzip2 python -y
WORKDIR /opt
RUN wget https://github.com/Illumina/manta/releases/download/v1.5.0/manta-1.5.0.centos6_x86_64.tar.bz2
RUN tar jxf manta-1.5.0.centos6_x86_64.tar.bz2
RUN mv manta-1.5.0.centos6_x86_64 /opt/manta
ENV PATH="/opt/manta:${PATH}"