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BBTools is a suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.
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FROM ubuntu:18.04
RUN apt-get update \
&& apt-get install -y \
wget \
default-jre \
&& rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
WORKDIR /opt
RUN wget https://sourceforge.net/projects/bbmap/files/BBMap_38.79.tar.gz/download -O BBMap_38.79.tar.gz \
&& tar xzvf BBMap_38.79.tar.gz \
&& rm BBMap_38.79.tar.gz
# Make all BBMap executables global
RUN ln -s /opt/bbmap/*.sh /usr/local/bin/