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Atropos is tool for specific, sensitive, and speedy trimming of NGS reads and it is a fork of the venerable Cutadapt read trimmer with the improvements.
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# Specifying the miniconda base image
FROM continuumio/miniconda3:4.6.14
# Set working directory
WORKDIR /opt
# Install atropos
RUN conda install -c bioconda -y pyyaml atropos=1.1.22